CRAN/E | SmartSVA

SmartSVA

Fast and Robust Surrogate Variable Analysis

Installation

About

Introduces a fast and efficient Surrogate Variable Analysis algorithm that captures variation of unknown sources (batch effects) for high-dimensional data sets. The algorithm is built on the 'irwsva.build' function of the 'sva' package and proposes a revision on it that achieves an order of magnitude faster running time while trading no accuracy loss in return.

Key Metrics

Version 0.1.3
R ≥ 3.1.0
Published 2017-05-28 2528 days ago
Needs compilation? yes
License GPL-3
CRAN checks SmartSVA results

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Maintainer

Maintainer

Jun Chen

Chen.Jun2@mayo.edu

Authors

Jun Chen
Ehsan Behnam

Material

Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

SmartSVA archive

Depends

R ≥ 3.1.0
sva
isva
RSpectra

Imports

Rcpp
stats
utils

LinkingTo

Rcpp
RcppEigen

Reverse Imports

MEAL
omicRexposome