CRAN/E | SimReg

SimReg

Similarity Regression

Installation

About

Similarity regression, evaluating the probability of association between sets of ontological terms and binary response vector. A no-association model is compared with one in which the log odds of a true response is linked to the semantic similarity between terms and a latent characteristic ontological profile - 'Phenotype Similarity Regression for Identifying the Genetic Determinants of Rare Diseases', Greene et al 2016 doi:10.1016/j.ajhg.2016.01.008.

Key Metrics

Version 3.3
R ≥ 3.0.0
Published 2021-02-15 1018 days ago
Needs compilation? yes
License GPL-2
License GPL-3
CRAN checks SimReg results

Downloads

Last 24 hours 19 -41%
Last 7 days 50 -9%
Last 30 days 230 +36%
Last 90 days 562 -4%
Last 365 days 2.485 -37%

Maintainer

Maintainer

Daniel Greene

dg333@cam.ac.uk

Authors

Daniel Greene

Material

Reference manual
Package source

Vignettes

Similarity Regression - Introduction
Prior phenotypic information

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

SimReg archive

Depends

R ≥ 3.0.0

Imports

Rcpp ≥ 0.11.1
ontologyIndex ≥ 2.0
ontologySimilarity ≥ 2.0
ontologyPlot

Suggests

knitr
rmarkdown

LinkingTo

Rcpp