CRAN/E | SimBIID

SimBIID

Simulation-Based Inference Methods for Infectious Disease Models

Installation

About

Provides some code to run simulations of state-space models, and then use these in the Approximate Bayesian Computation Sequential Monte Carlo (ABC-SMC) algorithm of Toni et al. (2009) doi:10.1098/rsif.2008.0172 and a bootstrap particle filter based particle Markov chain Monte Carlo (PMCMC) algorithm (Andrieu et al., 2010 doi:10.1111/j.1467-9868.2009.00736.x). Also provides functions to plot and summarise the outputs.

github.com/tjmckinley/SimBIID
Bug report File report

Key Metrics

Version 0.2.1
R ≥ 3.5
Published 2021-02-04 1184 days ago
Needs compilation? yes
License GPL (≥ 3)
CRAN checks SimBIID results

Downloads

Yesterday 11 -35%
Last 7 days 61 -12%
Last 30 days 220 -7%
Last 90 days 621 -26%
Last 365 days 2.700 -8%

Maintainer

Maintainer

Trevelyan J. McKinley

t.mckinley@exeter.ac.uk

Authors

Trevelyan J. McKinley

aut / cre

Stefan Widgren

aut

(Author of 'R/mparse.R')

Pavol Bauer

cph

(R/mparse.R)

Robin Eriksson

cph

(R/mparse.R)

Stefan Engblom

cph

(R/mparse.R)

Material

NEWS
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

SimBIID archive

Depends

R ≥ 3.5

Imports

stats
dplyr
purrr
tibble
ggplot2
tidyr
mvtnorm
grDevices
RColorBrewer
Rcpp
RcppXPtrUtils
coda

Suggests

parallel
GGally
testthat

LinkingTo

Rcpp
RcppArmadillo