CRAN/E | SigTree

SigTree

Identify and Visualize Significantly Responsive Branches in a Phylogenetic Tree

Installation

About

Provides tools to identify and visualize branches in a phylogenetic tree that are significantly responsive to some intervention, taking as primary inputs a phylogenetic tree (of class phylo) and a data frame (or matrix) of corresponding tip (OTU) labels and p-values.

Citation SigTree citation info

Key Metrics

Version 1.10.6
Published 2017-10-02 1995 days ago
Needs compilation? yes
License GPL-3
CRAN checks SigTree results

Downloads

Last 24 hours 2 -92%
Last 7 days 72 -14%
Last 30 days 266 -7%
Last 90 days 753 -1%
Last 365 days 3.636 -40%

Maintainer

Maintainer

John R. Stevens

john.r.stevens@usu.edu

Authors

John R. Stevens
Todd R. Jones

Material

NEWS
Reference manual
Package source

Vignettes

SigTree Tutorial Vignette

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

SigTree archive

Imports

ape
phylobase
phyext2
RColorBrewer
phyloseq
graphics
utils
stats
MASS
vegan