SeuratObject

Defines S4 classes for single-cell genomic data and associated information, such as dimensionality reduction embeddings, nearest-neighbor graphs, and spatially-resolved coordinates. Provides data access methods and R-native hooks to ensure the Seurat object is familiar to other R users. See Satija R, Farrell J, Gennert D, et al (2015) doi:10.1038/nbt.3192, Macosko E, Basu A, Satija R, et al (2015) doi:10.1016/j.cell.2015.05.002, and Stuart T, Butler A, et al (2019) doi:10.1016/j.cell.2019.05.031, Hao Y, Hao S, et al (2021) doi:10.1016/j.cell.2021.04.048 and Hao Y, et al (2023) doi:10.1101/2022.02.24.481684 for more details.