CRAN/E | STRMPS

STRMPS

Analysis of Short Tandem Repeat (STR) Massively Parallel Sequencing (MPS) Data

Installation

About

Loading, identifying, aggregating, manipulating, and analysing short tandem repeat regions of massively parallel sequencing data in forensic genetics. 'STRMPS' can work with the package 'STRaitRazoR' (an R interface to the 'STRaitRazor' commandline tool) for added speed. 'STRaitRazoR' only works on linux and can found at . The analyses and framework implemented in this package relies on the papers of Vilsen et al. (2017) doi:10.1016/j.fsigen.2017.01.017 and Vilsen et al. (2018) doi:10.1016/j.fsigen.2018.04.003. Lastly, note that the parallelisation in the package relies on mclapply() and, thus, speed-ups will only be seen on UNIX based systems.

Key Metrics

Version 0.5.8
R ≥ 3.1.0
Published 2018-07-02 1975 days ago
Needs compilation? no
License MIT
License File
CRAN checks STRMPS results

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Maintainer

Maintainer

Søren B. Vilsen

svilsen@math.aau.dk

Authors

Søren B. Vilsen

Material

Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Depends

R ≥ 3.1.0
Biostrings
ShortRead

Imports

methods
utils
IRanges
tidyr
tibble
dplyr
stringr
purrr
parallel

Suggests

STRaitRazoR