CRAN/E | SPUTNIK

SPUTNIK

SPatially aUTomatic deNoising for Ims toolKit

Installation

About

A set of tools for the peak filtering of mass spectrometry imaging data (MSI or IMS) based on spatial distribution of signal. Given a region-of-interest (ROI), representing the spatial region where the informative signal is expected to be localized, a series of filters determine which peak signals are characterized by an implausible spatial distribution. The filters reduce the dataset dimensionality and increase its information vs noise ratio, improving the quality of the unsupervised analysis results, reducing data dimensionality and simplifying the chemical interpretation.

Citation SPUTNIK citation info
github.com/paoloinglese/SPUTNIK
Bug report File report

Key Metrics

Version 1.4.1
R ≥ 3.4.0
Published 2022-11-24 521 days ago
Needs compilation? no
License GPL (≥ 3)
CRAN checks SPUTNIK results

Downloads

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Last 90 days 841 +21%
Last 365 days 3.568 -16%

Maintainer

Maintainer

Paolo Inglese

p.inglese@outlook.com

Authors

Paolo Inglese

aut / cre

Goncalo Correia

aut / ctb

Material

README
NEWS
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

SPUTNIK archive

Depends

R ≥ 3.4.0

Imports

e1071
edgeR
spatstat.explore
spatstat.geom
viridis
ggplot2
reshape
imager
methods
infotheo
parallel
irlba
doSNOW
foreach

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