CRAN/E | SPAS

SPAS

Stratified-Petersen Analysis System

Installation

About

The Stratified-Petersen Analysis System (SPAS) is designed to estimate abundance in two-sample capture-recapture experiments where the capture and recaptures are stratified. This is a generalization of the simple Lincoln-Petersen estimator. Strata may be defined in time or in space or both, and the s strata in which marking takes place may differ from the t strata in which recoveries take place. When s=t, SPAS reduces to the method described by Darroch (1961) doi:10.2307/2332748. When sdoi:10.2307/2533994. Schwarz and Taylor (1998) doi:10.1139/f97-238 describe the use of SPAS in estimating return of salmon stratified by time and geography. A related package, BTSPAS, deals with temporal stratification where a spline is used to model the distribution of the population over time as it passes the second capture location. This is the R-version of the (now obsolete) standalone Windows program available at .

Key Metrics

Version 2024.1.31
Published 2024-01-25 92 days ago
Needs compilation? yes
License GPL-2
License GPL-3
CRAN checks SPAS results

Downloads

Yesterday 17 0%
Last 7 days 46 +24%
Last 30 days 166 -15%
Last 90 days 613 -24%
Last 365 days 2.549 +10%

Maintainer

Maintainer

Carl James Schwarz

cschwarz.stat.sfu.ca@gmail.com

Authors

Carl James Schwarz

Material

README
NEWS
Reference manual
Package source

Vignettes

Automatic Pooling
Conne River 1991 Data
Conne River 1992 Data
Harrison River Female Chinook 2011 Data
Pooling Columns
Testing for Pooled Petersen
Things that can go wrong

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

SPAS archive

Imports

MASS
Matrix
msm
numDeriv
plyr
reshape2
TMB ≥ 1.7.15

Suggests

knitr
rmarkdown

LinkingTo

TMB
RcppEigen

Reverse Imports

Petersen