CRAN/E | SCpubr

SCpubr

Generate Publication Ready Visualizations of Single Cell Transcriptomics Data

Installation

About

A system that provides a streamlined way of generating publication ready plots for known Single-Cell transcriptomics data in a “publication ready” format. This is, the goal is to automatically generate plots with the highest quality possible, that can be used right away or with minimal modifications for a research article.

Citation SCpubr citation info
github.com/enblacar/SCpubr/
enblacar.github.io/SCpubr-book/
Bug report File report

Key Metrics

Version 2.0.2
R ≥ 4.0.0
Published 2023-10-11 190 days ago
Needs compilation? no
License GPL-3
CRAN checks SCpubr results

Downloads

Yesterday 25 0%
Last 7 days 92 -28%
Last 30 days 539 -14%
Last 90 days 1.905 -5%
Last 365 days 7.719 +128%

Maintainer

Maintainer

Enrique Blanco-Carmona

scpubr@gmail.com

Authors

Enrique Blanco-Carmona

cre / aut

Material

README
NEWS
Reference manual
Package source

Vignettes

reference_manual

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

SCpubr archive

Depends

R ≥ 4.0.0

Suggests

AnnotationDbi
assertthat
AUCell
circlize
cli
cluster
clusterProfiler
colorspace
ComplexHeatmap
covr
decoupleR
dplyr ≥ 1.1.0
enrichplot
forcats
ggalluvial
ggbeeswarm
ggdist
ggExtra
ggh4x
ggnewscale
ggplot2 ≥ 3.4.0
ggplotify
ggrastr
ggrepel
ggridges
ggsignif
graphics
infercnv
knitr
labeling
magrittr
MASS
Matrix
methods
Nebulosa
org.Hs.eg.db
patchwork
pheatmap
plyr
purrr
qpdf
RColorBrewer
rjags
rlang
rmarkdown
scales
scattermore
Seurat
SeuratObject
sf
Load all 58 items
(warning: might lead to performance issues and take some time)