CRAN/E | ReporterScore

ReporterScore

Generalized Reporter Score-Based Enrichment Analysis for Omics Data

Installation

About

Inspired by the classic 'RSA', we developed the improved 'Generalized Reporter Score-based Analysis (GRSA)' method, implemented in the R package 'ReporterScore', along with comprehensive visualization methods and pathway databases. 'GRSA' is a threshold-free method that works well with all types of biomedical features, such as genes, chemical compounds, and microbial species. Importantly, the 'GRSA' supports multi-group and longitudinal experimental designs, because of the included multi-group-compatible statistical methods.

Citation ReporterScore citation info
github.com/Asa12138/ReporterScore
Bug report File report

Key Metrics

Version 0.1.2
R ≥ 4.2.0
Published 2024-01-15 105 days ago
Needs compilation? no
License GPL-3
CRAN checks ReporterScore results

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Maintainer

Maintainer

Chen Peng

pengchen2001@zju.edu.cn

Authors

Chen Peng

aut / cre

Material

Reference manual
Package source

Vignettes

ReporterScore

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

ReporterScore archive

Depends

R ≥ 4.2.0

Imports

magrittr
dplyr
stats
ggplot2 ≥ 3.2.0
pcutils
utils
scales
ggnewscale
reshape2
stringr
foreach

Suggests

knitr
rmarkdown
plyr
e1071
factoextra
snow
doSNOW
pheatmap
readr
ggrepel
R.utils
KEGGREST
clusterProfiler
enrichplot
pathview
GSA
vegan
MetaNet
igraph