CRAN/E | RTIGER

RTIGER

HMM-Based Model for Genotyping and Cross-Over Identification

Installation

About

Our method integrates information from all sequenced samples, thus avoiding loss of alleles due to low coverage. Moreover, it increases the statistical power to uncover sequencing or alignment errors doi:10.1093/plphys/kiad191.

Key Metrics

Version 2.1.0
R ≥ 3.6
Published 2023-03-29 396 days ago
Needs compilation? no
License GPL-2
License GPL-3
CRAN checks RTIGER results

Downloads

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Last 30 days 227 +4%
Last 90 days 659 -26%
Last 365 days 2.903 +10%

Maintainer

Maintainer

Rafael Campos-Martin

rfael.mpi@gmail.com

Authors

Rafael Campos-Martin

cre

Sophia Schmickler

aut

Manish Goel

ctb

Korbinian Schneeberger

aut

Achim Tresch

aut

Material

README
Reference manual
Package source

Vignettes

tutorial_RTIGER

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

RTIGER archive

Depends

R ≥ 3.6
GenomicRanges
GenomeInfoDb

Imports

methods
e1071
extraDistr
reshape2
ggplot2
TailRank
JuliaCall
IRanges
qpdf
grDevices
graphics
stats
utils

Suggests

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