CRAN/E | RIbench

RIbench

Benchmark Suite for Indirect Methods for RI Estimation

Installation

About

The provided benchmark suite enables the automated evaluation and comparison of any existing and novel indirect method for reference interval ('RI') estimation in a systematic way. Indirect methods take routine measurements of diagnostic tests, containing pathological and non-pathological samples as input and use sophisticated statistical methods to derive a model describing the distribution of the non-pathological samples, which can then be used to derive reference intervals. The benchmark suite contains 5,760 simulated test sets with varying difficulty. To include any indirect method, a custom wrapper function needs to be provided. The package offers functions for generating the test sets, executing the indirect method and evaluating the results. See ?RIbench or vignette("RIbench_package") for a more comprehensive description of the features. A detailed description and application is described in Ammer T., Schuetzenmeister A., Prokosch H.-U., Zierk J., Rank C.M., Rauh M. "RIbench: A Proposed Benchmark for the Standardized Evaluation of Indirect Methods for Reference Interval Estimation". Clinical Chemistry (2022) doi:10.1093/clinchem/hvac142.

Key Metrics

Version 1.0.2
R ≥ 3.3.0
Published 2022-11-27 522 days ago
Needs compilation? no
License GPL (≥ 3)
CRAN checks RIbench results

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Maintainer

Maintainer

Tatjana Ammer

tatjana.ammer@roche.com

Authors

Tatjana Ammer

aut / cre

Christopher Rank

aut

Andre Schuetzenmeister

aut

Material

NEWS
Reference manual
Package source

Vignettes

RIbench: Benchmark Suite for the Standardized Evaluation of Indirect Methods for Reference Interval Estimation

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

RIbench archive

Depends

R ≥ 3.3.0

Imports

stats
optparse
digest
data.table
graphics
grDevices
RColorBrewer

Suggests

knitr
rmarkdown