CRAN/E | RHybridFinder

RHybridFinder

Identification of Hybrid Peptides in Immunopeptidomic Analyses

Installation

About

Tool for the analysis Mass Spectrometry (MS) data in the context of immunopeptidomic analysis for the identification of hybrid peptides and the predictions of binding affinity of all peptides using 'netMHCpan' doi:10.1093/nar/gkaa379 while providing a summary of the netMHCpan output. 'RHybridFinder' (RHF) is destined for researchers who are looking to analyze their MS data for the purpose of identification of potential spliced peptides. This package, developed mainly in base R, is based on the workflow published by Faridi et al. in 2018 doi:10.1126/sciimmunol.aar3947.

Key Metrics

Version 0.2.0
R ≥ 3.5.0
Published 2021-08-17 994 days ago
Needs compilation? no
License MIT
License File
CRAN checks RHybridFinder results

Downloads

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Maintainer

Maintainer

Frederic Saab

frederic.saab@umontreal.ca

Authors

Frederic Saab

aut / cre

Peter Kubiniok

aut

Material

NEWS
Reference manual
Package source

Vignettes

RHybridFinder

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

RHybridFinder archive

Depends

R ≥ 3.5.0

Imports

doParallel
foreach
seqinr

Suggests

knitr
rmarkdown