CRAN/E | Quartet

Quartet

Comparison of Phylogenetic Trees Using Quartet and Split Measures

Installation

About

Calculates the number of four-taxon subtrees consistent with a pair of cladograms, calculating the symmetric quartet distance of Bandelt & Dress (1986), Reconstructing the shape of a tree from observed dissimilarity data, Advances in Applied Mathematics, 7, 309-343 doi:10.1016/0196-8858(86)90038-2, and using the tqDist algorithm of Sand et al. (2014), tqDist: a library for computing the quartet and triplet distances between binary or general trees, Bioinformatics, 30, 2079–2080 doi:10.1093/bioinformatics/btu157 for pairs of binary trees.

Citation Quartet citation info
ms609.github.io/Quartet/
github.com/ms609/Quartet/
Copyright Incorporates code modified from tqDist <doi:10.1093/bioinformatics/btu157>.
Bug report File report

Key Metrics

Version 1.2.6
R ≥ 3.5.0
Published 2024-02-09 76 days ago
Needs compilation? yes
License GPL-2
License GPL-3
CRAN checks Quartet results
Language en-GB

Downloads

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Last 30 days 471 +7%
Last 90 days 1.419 +26%
Last 365 days 4.689 -20%

Maintainer

Maintainer

Martin R. Smith

martin.smith@durham.ac.uk

Authors

Martin R. Smith

aut / cre / cph

Andreas Sand

ant

Gerth Stølting Brodal

ant

Rolf Fagerberg

ant

Thomas Mailund

ant

Christian N. S. Pedersen

ant

Jens Johansen

ant

Morten K. Holt

ant

Material

README
NEWS
Reference manual
Package source

In Views

Phylogenetics

Vignettes

About the quartet distance
Getting started with Quartet

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

Quartet archive

Depends

R ≥ 3.5.0
TreeTools ≥ 1.4.0

Imports

ape
Rdpack ≥ 0.7
Ternary ≥ 1.0
viridisLite

Suggests

bookdown
knitr
phangorn
Rcpp
rmarkdown
testthat
usethis
vdiffr

LinkingTo

Rcpp

Reverse Suggests

CongreveLamsdell2016
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