CRAN/E | QuantNorm

QuantNorm

Mitigating the Adverse Impact of Batch Effects in Sample Pattern Detection

Installation

About

Modifies the distance matrix obtained from data with batch effects, so as to improve the performance of sample pattern detection, such as clustering, dimension reduction, and construction of networks between subjects. The method has been published in Bioinformatics (Fei et al, 2018, doi:10.1093/bioinformatics/bty117). Also available on 'GitHub' .

Bug report File report

Key Metrics

Version 1.0.5
R ≥ 3.3.0
Published 2019-02-01 1914 days ago
Needs compilation? no
License GPL-2
License GPL-3
CRAN checks QuantNorm results

Downloads

Yesterday 9 0%
Last 7 days 39 -29%
Last 30 days 142 +4%
Last 90 days 395 -38%
Last 365 days 1.835 -22%

Maintainer

Maintainer

Teng Fei

tfei@emory.edu

Authors

Teng Fei
Tianwei Yu

Material

README
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

QuantNorm archive

Depends

R ≥ 3.3.0

Imports

stats
utils

Suggests

GGally
ggplot2
network
pheatmap
rgl
sna