CRAN/E | PeakSegDisk

PeakSegDisk

Disk-Based Constrained Change-Point Detection

Installation

About

Disk-based implementation of Functional Pruning Optimal Partitioning with up-down constraints doi:10.18637/jss.v101.i10 for single-sample peak calling (independently for each sample and genomic problem), can handle huge data sets (10^7 or more).

Citation PeakSegDisk citation info
github.com/tdhock/PeakSegDisk
Bug report File report

Key Metrics

Version 2023.11.27
R ≥ 2.10
Published 2023-11-28 142 days ago
Needs compilation? yes
License GPL-3
CRAN checks PeakSegDisk results

Downloads

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Maintainer

Maintainer

Toby Dylan Hocking

toby.hocking@r-project.org

Authors

Toby Dylan Hocking

Material

NEWS
Reference manual
Package source

In Views

Omics

Vignettes

Examples
Spatial correlation
Worst case time complexity

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

PeakSegDisk archive

Depends

R ≥ 2.10

Imports

data.table ≥ 1.9.8

Suggests

testthat
ggplot2
future.apply
future
knitr
markdown

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