CRAN/E | PSCBS

PSCBS

Analysis of Parent-Specific DNA Copy Numbers

Installation

About

Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome. Both tumor-normal paired and tumor-only analyses are supported.

Citation PSCBS citation info
github.com/HenrikBengtsson/PSCBS
Bug report File report

Key Metrics

Version 0.67.0
R ≥ 3.2.0
Published 2024-02-17 72 days ago
Needs compilation? no
License GPL-2
License GPL-3
CRAN checks PSCBS results

Downloads

Yesterday 11 0%
Last 7 days 183 -13%
Last 30 days 747 -20%
Last 90 days 2.699 +29%
Last 365 days 8.903 -10%

Maintainer

Maintainer

Henrik Bengtsson

henrikb@braju.com

Authors

Henrik Bengtsson

aut / cre / cph

Pierre Neuvial

aut

Venkatraman E. Seshan

aut

Adam B. Olshen

aut

Paul T. Spellman

aut

Richard A. Olshen

aut

Frank E Harrell Jr

ctb

(Weighted quantile estimator adopted from Hmisc::wtd.quantile())

Material

README
NEWS
Reference manual
Package source

In Views

Omics

Vignettes

Total copy-number segmentation using CBS
Parent-specific copy-number segmentation using Paired PSCBS

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

PSCBS archive

Depends

R ≥ 3.2.0

Imports

R.methodsS3 ≥ 1.8.2
R.oo ≥ 1.25.0
R.utils ≥ 2.12.0
R.cache ≥ 0.16.0
matrixStats ≥ 0.62.0
aroma.light ≥2.4.0
DNAcopy ≥ 1.42.0
listenv ≥ 0.8.0
future ≥1.28.0
parallel
graphics
grDevices
stats
utils

Suggests

R.rsp ≥ 0.45.0
R.devices ≥ 2.17.1
ggplot2 ≥ 3.2.1

Reverse Imports

aroma.cn
aroma.core
cfdnakit
EstMix

Reverse Suggests

jointseg
PureCN