CRAN/E | POSTm

POSTm

Phylogeny-Guided OTU-Specific Association Test for Microbiome Data

Installation

About

Implements the Phylogeny-Guided Microbiome OTU-Specific Association Test method, which boosts the testing power by adaptively borrowing information from phylogenetically close OTUs (operational taxonomic units) of the target OTU. This method is built on a kernel machine regression framework and allows for flexible modeling of complex microbiome effects, adjustments for covariates, and can accommodate both continuous and binary outcomes.

Key Metrics

Version 1.4
Published 2024-04-17 14 days ago
Needs compilation? no
License GPL-2
CRAN checks POSTm results

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Maintainer

Maintainer

Shannon T. Holloway

shannon.t.holloway@gmail.com

Authors

Caizhi Huang

aut

Jung-Ying Tzeng

aut

Shannon T. Holloway

aut / cre

Material

NEWS
Reference manual
Package source

Vignettes

POSTm: $\text{\underline{P}

macOS

r-prerel

arm64

r-release

arm64

r-oldrel

arm64

r-prerel

x86_64

r-release

x86_64

Windows

r-prerel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

POSTm archive

Depends

methods

Imports

CompQuadForm
ape

Suggests

multtest
rmarkdown
knitr