CRAN/E | POMS

POMS

Phylogenetic Organization of Metagenomic Signals

Installation

About

Code to identify functional enrichments across diverse taxa in phylogenetic tree, particularly where these taxa differ in abundance across samples in a non-random pattern. The motivation for this approach is to identify microbial functions encoded by diverse taxa that are at higher abundance in certain samples compared to others, which could indicate that such functions are broadly adaptive under certain conditions. See 'GitHub' repository for tutorial and examples: . Citation: Gavin M. Douglas, Molly G. Hayes, Morgan G. I. Langille, Elhanan Borenstein (2022) doi:10.1093/bioinformatics/btac655.

Citation POMS citation info

Key Metrics

Version 1.0.1
R ≥ 3.5.0
Published 2022-12-14 507 days ago
Needs compilation? no
License GPL-3
CRAN checks POMS results

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Maintainer

Maintainer

Gavin Douglas

gavinmdouglas@gmail.com

Authors

Gavin Douglas

aut / cre

Material

README
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-develnot available

x86_64

r-releasenot available

x86_64

r-oldrelnot available

x86_64

Depends

R ≥ 3.5.0

Imports

ape ≥ 3.0
data.table
MASS
parallel ≥ 3.3.0
phangorn ≥ 2.0.0
phylolm ≥ 2.6
utils
XNomial ≥ 1.0.4

Suggests

testthat ≥ 3.0.0