CRAN/E | POINT

POINT

Protein Structure Guided Local Test

Installation

About

Provides an implementation of a rare variant association test that utilizes protein tertiary structure to increase signal and to identify likely causal variants. Performs structure-guided collapsing, which leads to local tests that borrow information from neighboring variants on a protein and that provide association information on a variant-specific level. For details of the implemented method see West, R. M., Lu, W., Rotroff, D. M., Kuenemann, M., Chang, S-M., Wagner M. J., Buse, J. B., Motsinger-Reif, A., Fourches, D., and Tzeng, J-Y. (2019) doi:10.1371/journal.pcbi.1006722.

Key Metrics

Version 1.3
Published 2023-10-01 213 days ago
Needs compilation? no
License GPL-2
CRAN checks POINT results

Downloads

Yesterday 14 0%
Last 7 days 58 -30%
Last 30 days 211 -9%
Last 90 days 629 -34%
Last 365 days 2.770 -2%

Maintainer

Maintainer

Shannon T. Holloway

shannon.t.holloway@gmail.com

Authors

Rachel Marceau West
Shannon T. Holloway

Material

NEWS
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

POINT archive

Depends

methods
stats
rARPACK
Matrix
CompQuadForm