CRAN/E | PINSPlus

PINSPlus

Clustering Algorithm for Data Integration and Disease Subtyping

Installation

About

Provides a robust approach for omics data integration and disease subtyping. PINSPlus is fast and supports the analysis of large datasets with hundreds of thousands of samples and features. The software automatically determines the optimal number of clusters and then partitions the samples in a way such that the results are robust against noise and data perturbation (Nguyen et al. (2019) doi:10.1093/bioinformatics/bty1049, Nguyen et al. (2017)doi:10.1101/gr.215129.116, Nguyen et al. (2021)doi:10.3389/fonc.2021.725133).

Citation PINSPlus citation info

Key Metrics

Version 2.0.7
R ≥ 2.10
Published 2024-04-05 33 days ago
Needs compilation? yes
License LGPL-2
License LGPL-2.1
License LGPL-3
CRAN checks PINSPlus results

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Maintainer

Maintainer

Van-Dung Pham

dvp0001@auburn.edu

Authors

Hung Nguyen
Bang Tran
Duc Tran
Tin Nguyen

Material

Reference manual
Package source

In Views

Omics

Vignettes

PINSPlus

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

PINSPlus archive

Depends

R ≥ 2.10

Imports

foreach
entropy
doParallel
matrixStats
Rcpp
RcppParallel
FNN
cluster
irlba
mclust
impute

Suggests

knitr
rmarkdown
survival
markdown

LinkingTo

Rcpp
RcppArmadillo
RcppParallel

Reverse Imports

scISR