CRAN/E | PGRdup

PGRdup

Discover Probable Duplicates in Plant Genetic Resources Collections

Installation

About

Provides functions to aid the identification of probable/possible duplicates in Plant Genetic Resources (PGR) collections using 'passport databases' comprising of information records of each constituent sample. These include methods for cleaning the data, creation of a searchable Key Word in Context (KWIC) index of keywords associated with sample records and the identification of nearly identical records with similar information by fuzzy, phonetic and semantic matching of keywords.

Citation PGRdup citation info
cran.r-project.org/package=PGRdup
github.com/aravind-j/PGRdup
doi.org/10.5281/zenodo.841963
aravind-j.github.io/PGRdup/
www.rdocumentation.org/packages/PGRdup
Copyright 2014-2023, ICAR-NBPGR
Bug report File report

Key Metrics

Version 0.2.3.9
R ≥ 3.0.2
Published 2023-08-31 237 days ago
Needs compilation? yes
License GPL-2
License GPL-3
CRAN checks PGRdup results

Downloads

Yesterday 9 -40%
Last 7 days 98 -3%
Last 30 days 337 -15%
Last 90 days 1.179 -14%
Last 365 days 4.856 +10%

Maintainer

Maintainer

J. Aravind

j.aravind@icar.gov.in

Authors

J. Aravind

aut / cre

J. Radhamani

aut

Kalyani Srinivasan

aut

B. Ananda Subhash

aut

Rishi Kumar Tyagi

aut

ICAR-NBGPR

cph

(www.nbpgr.ernet.in)

Maurice Aubrey

ctb

(Double Metaphone)

Kevin Atkinson

ctb

(Double Metaphone)

Lawrence Philips

ctb

(Double Metaphone)

Material

README
NEWS
Reference manual
Package source

In Views

Agriculture

Vignettes

Introduction

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

PGRdup archive

Depends

R ≥ 3.0.2

Imports

data.table ≥ 1.9.3
igraph
stringdist ≥ 0.9.4
stringi
ggplot2
grid
gridExtra
methods
utils
stats

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