CRAN/E | NMF

NMF

Algorithms and Framework for Nonnegative Matrix Factorization (NMF)

Installation

About

Provides a framework to perform Non-negative Matrix Factorization (NMF). The package implements a set of already published algorithms and seeding methods, and provides a framework to test, develop and plug new/custom algorithms. Most of the built-in algorithms have been optimized in C++, and the main interface function provides an easy way of performing parallel computations on multicore machines.

Citation NMF citation info
renozao.github.io/NMF/

Key Metrics

Version 0.27
R ≥ 3.0.0
Published 2024-02-08 50 days ago
Needs compilation? yes
License GPL-2
License GPL-3
CRAN checks NMF results

Downloads

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Maintainer

Maintainer

Nicolas Sauwen

nicolas.sauwen@openanalytics.eu

Authors

Renaud Gaujoux
Cathal Seoighe

Material

README
NEWS
Reference manual
Package source

Vignettes

An introduction to the package NMF
NMF: generating heatmaps

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

NMF archive

Depends

R ≥ 3.0.0
methods
utils
registry
rngtools ≥ 1.2.3
cluster

Imports

graphics
stats
stringr ≥ 1.0.0
digest
grid
grDevices
gridBase
colorspace
RColorBrewer
foreach
doParallel
ggplot2
reshape2
Biobase
codetools
BiocManager

Suggests

fastICA
doMPI
bigmemory ≥ 4.2
synchronicity ≥ 1.3.2
corpcor
xtable
devtools
knitr
RUnit

Reverse Depends

fabisearch
InterSIM
IntNMF
musicatk
MutationalPatterns
signeR
SomaticSignatures
SparseSignatures

Reverse Imports

clusterExperiment
DBNMFrank
debCAM
diceR
hNMF
pcaExplorer
projectR
scITD
shattering
sigminer
SomaticSignatures
spectralAnalysis
SpNMF
SPOTlight

Reverse Suggests

AUCell
BEARscc
cola
crassmat
dimRed
Evacluster
iTOP
maftools
MAST
mlr3pipelines
scone

Reverse Enhances

fdm2id