CRAN/E | NGCHM

NGCHM

Next Generation Clustered Heat Maps

Installation

About

Next-Generation Clustered Heat Maps (NG-CHMs) allow for dynamic exploration of heat map data in a web browser. 'NGCHM' allows users to create both stand-alone HTML files containing a Next-Generation Clustered Heat Map, and .ngchm files to view in the NG-CHM viewer. See Ryan MC, Stucky M, et al (2020) doi:10.12688/f1000research.20590.2 for more details.

md-anderson-bioinformatics.github.io/NGCHM-R/
github.com/MD-Anderson-Bioinformatics/NGCHM-R
System requirements Java (>= 11) Git

Key Metrics

Version 1.0.2
R ≥ 3.4.0
Published 2024-03-28 35 days ago
Needs compilation? no
License GPL-3
CRAN checks NGCHM results

Downloads

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Maintainer

Maintainer

Mary A Rohrdanz

marohrdanz@mdanderson.org

Authors

Bradley M Broom

aut

Mary A Rohrdanz

ctb / cre

Chris Wakefield

ctb

James Melott

ctb

MD Anderson Cancer Center

cph

Material

README
Reference manual
Package source

Additional repos

md-anderson-bioinformatics.r-universe.dev

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

NGCHM archive

Depends

R ≥ 3.4.0

Imports

digest
grDevices
htmltools
httr
jsonlite
logger ≥0.2.0
methods
stats
tsvio
utils

Suggests

knitr
rmarkdown
Rtsne
testthat
umap
uwot

Enhances

NGCHMDemoData
NGCHMSupportFiles