CRAN/E | MicroNiche

MicroNiche

Microbial Niche Measurements

Installation

About

Measures niche breadth and overlap of microbial taxa from large matrices. Niche breadth measurements include Levins' niche breadth (Bn) index, Hurlbert's Bn and Feinsinger's proportional similarity (PS) index. (Feinsinger, P., Spears, E.E., Poole, R.W. (1981) doi:10.2307/1936664). Niche overlap measurements include Levin's Overlap (Ludwig, J.A. and Reynolds, J.F. (1988, ISBN:0471832359)) and a Jaccard similarity index of Feinsinger's PS values between taxa pairs, as Proportional Overlap.

Key Metrics

Version 1.0.0
Published 2020-01-30 1547 days ago
Needs compilation? no
License GPL-2
CRAN checks MicroNiche results

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Maintainer

Maintainer

Damien Finn

damien.finn@uqconnect.edu.au

Authors

Damien Finn

aut / cre

Material

Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Depends

ggplot2
reshape2
stats