CRAN/E | MetProc

MetProc

Separate Metabolites into Likely Measurement Artifacts and True Metabolites

Installation

About

Split an untargeted metabolomics data set into a set of likely true metabolites and a set of likely measurement artifacts. This process involves comparing missing rates of pooled plasma samples and biological samples. The functions assume a fixed injection order of samples where biological samples are randomized and processed between intermittent pooled plasma samples. By comparing patterns of missing data across injection order, metabolites that appear in blocks and are likely artifacts can be separated from metabolites that seem to have random dispersion of missing data. The two main metrics used are: 1. the number of consecutive blocks of samples with present data and 2. the correlation of missing rates between biological samples and flanking pooled plasma samples.

Key Metrics

Version 1.0.1
R ≥ 3.1.0
Published 2016-05-19 2908 days ago
Needs compilation? no
License GPL-2
License GPL-3
CRAN checks MetProc results

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Maintainer

Maintainer

Mark Chaffin

mac8278@mail.harvard.edu

Authors

Mark Chaffin

Material

Reference manual
Package source

Vignettes

MetProc Tutorial

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Depends

R ≥ 3.1.0

Imports

gplots
fastcluster

Suggests

knitr
rmarkdown