CRAN/E | MetChem

MetChem

Chemical Structural Similarity Analysis

Installation

About

A new pipeline to explore chemical structural similarity across metabolite. It allows to classify metabolites in structurally-related modules and identify common shared functional groups. KODAMA algorithm is used to highlight structural similarity between metabolites. See Cacciatore S, Tenori L, Luchinat C, Bennett PR, MacIntyre DA. (2017) Bioinformatics doi:10.1093/bioinformatics/btw705 and Cacciatore S, Luchinat C, Tenori L. (2014) Proc Natl Acad Sci USA doi:10.1073/pnas.1220873111.

Key Metrics

Version 0.3
R ≥ 3.5.0
Published 2023-02-28 434 days ago
Needs compilation? no
License GPL-2
License GPL-3
CRAN checks MetChem results

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Maintainer

Maintainer

Stefano Cacciatore

tkcaccia@gmail.com

Authors

Ebtesam Abdel-Shafy

aut

Tadele Melak

aut

David A. MacIntyre

aut

Giorgia Zadra

aut

Luiz F. Zerbini

aut

Silvano Piazza

aut

Stefano Cacciatore

aut / cre

Material

Reference manual
Package source

Vignettes

A simple pipeline to explore structural similarities between metabolites

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

MetChem archive

Depends

R ≥ 3.5.0
stats
KODAMA ≥ 2.3
httr
XML
fingerprint
rcdk ≥ 3.4.3

Suggests

knitr
rmarkdown
readxl
impute
pheatmap
RColorBrewer