CRAN/E | MBMethPred

MBMethPred

Medulloblastoma Subgroups Prediction

Installation

About

Utilizing a combination of machine learning models (Random Forest, Naive Bayes, K-Nearest Neighbor, Support Vector Machines, Extreme Gradient Boosting, and Linear Discriminant Analysis) and a deep Artificial Neural Network model, 'MBMethPred' can predict medulloblastoma subgroups, including wingless (WNT), sonic hedgehog (SHH), Group 3, and Group 4 from DNA methylation beta values. See Sharif Rahmani E, Lawarde A, Lingasamy P, Moreno SV, Salumets A and Modhukur V (2023), MBMethPred: a computational framework for the accurate classification of childhood medulloblastoma subgroups using data integration and AI-based approaches. Front. Genet. 14:1233657. doi:10.3389/fgene.2023.1233657 for more details.

github.com/sharifrahmanie/MBMethPred
Bug report File report

Key Metrics

Version 0.1.4.2
R ≥ 3.5.0
Published 2023-09-18 213 days ago
Needs compilation? no
License GPL-2
License GPL-3
CRAN checks MBMethPred results

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Maintainer

Maintainer

Edris Sharif Rahmani

rahmani.biotech@gmail.com

Authors

Edris Sharif Rahmani

aut / ctb / cre

Ankita Sunil Lawarde

aut / ctb

Vijayachitra Modhukur

aut / ctb

Material

Reference manual
Package source

Vignettes

MBMethPred introduction

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

MBMethPred archive

Depends

R ≥ 3.5.0

Imports

stringr
ggplot2
parallel
caTools
caret
keras
MASS
Rtsne
SNFtool
class
dplyr
e1071
pROC
randomForest
readr
reshape2
reticulate
rgl
tensorflow
xgboost

Suggests

knitr
rmarkdown
testthat
utils
stats
scales