CRAN/E | MARVEL

MARVEL

Revealing Splicing Dynamics at Single-Cell Resolution

Installation

About

Alternative splicing represents an additional and underappreciated layer of complexity underlying gene expression profiles. Nevertheless, there remains hitherto a paucity of software to investigate splicing dynamics at single-cell resolution. 'MARVEL' enables splicing analysis of single-cell RNA-sequencing data generated from plate- and droplet-based library preparation methods.

Key Metrics

Version 1.4.0
R ≥ 3.5.0
Published 2022-10-31 542 days ago
Needs compilation? no
License GPL-3
CRAN checks MARVEL results

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Maintainer

Maintainer

Sean Wen

sean.wenwx@gmail.com

Authors

Sean Wen

aut / cre

Material

Reference manual
Package source

Vignettes

MARVEL

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-develnot available

x86_64

r-releasenot available

x86_64

r-oldrelnot available

x86_64

Old Sources

MARVEL archive

Depends

R ≥ 3.5.0

Imports

ggplot2 ≥ 3.3.2
Matrix ≥ 1.3-3
methods
plyr ≥1.8.4
scales ≥ 1.1.1

Suggests

AnnotationDbi ≥ 1.48.0
Biostrings ≥ 2.56.0
BSgenome ≥ 1.56.0
BSgenome.Hsapiens.NCBI.GRCh38 ≥ 1.3.1000
clusterProfiler ≥ 3.16.0
factoextra ≥ 1.0.7
FactoMineR ≥ 2.3
fitdistrplus ≥ 1.1-1
GenomicRanges ≥ 1.42.0
ggnewscale ≥ 0.4.5
ggrepel ≥ 0.9.1
gridExtra ≥ 2.3
gtools ≥ 3.9.2
IRanges ≥ 2.24.1
kableExtra ≥ 1.3.1
knitr ≥ 1.29
kSamples ≥ 1.2-9
markdown ≥ 1.1
MAST ≥ 1.16.0
org.Hs.eg.db ≥ 3.10.0
org.Mm.eg.db ≥3.11.4
parallel
pheatmap ≥ 1.0.12
reshape2 ≥ 1.4.4
rmarkdown ≥ 2.3
S4Vectors ≥ 0.26.1
stringr ≥ 1.4.0
textclean ≥ 0.9.3
twosamples ≥ 1.1.1
wiggleplotr ≥1.12.1