CRAN/E | LncFinder

LncFinder

LncRNA Identification and Analysis Using Heterologous Features

Installation

About

Long non-coding RNAs identification and analysis. Default models are trained with human, mouse and wheat datasets by employing SVM. Features are based on intrinsic composition of sequence, EIIP value (electron-ion interaction pseudopotential), and secondary structure. This package can also extract other classic features and build new classifiers. Reference: Han SY., Liang YC., Li Y., et al. (2018) doi:10.1093/bib/bby065.

Citation LncFinder citation info
bmbl.bmi.osumc.edu/lncfinder/

Key Metrics

Version 1.1.5
R ≥ 2.10
Published 2021-12-09 880 days ago
Needs compilation? no
License GPL-3
CRAN checks LncFinder results

Downloads

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Maintainer

Maintainer

Siyu HAN

hansy15@mails.jlu.edu.cn

Authors

Siyu HAN

aut / cre

Ying LI

aut

Yanchun LIANG

aut

Material

README
NEWS
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

LncFinder archive

Depends

R ≥ 2.10

Imports

seqinr ≥ 2.1-3
e1071 ≥ 1.0
parallel ≥ 2.1.0
caret ≥ 6.0-71