CRAN/E | KOGMWU

KOGMWU

Functional Summary and Meta-Analysis of Gene Expression Data

Installation

About

Rank-based tests for enrichment of KOG (euKaryotic Orthologous Groups) classes with up- or down-regulated genes based on a continuous measure. The meta-analysis is based on correlation of KOG delta-ranks across datasets (delta-rank is the difference between mean rank of genes belonging to a KOG class and mean rank of all other genes). With binary measure (1 or 0 to indicate significant and non-significant genes), one-tailed Fisher's exact test for over-representation of each KOG class among significant genes will be performed.

Key Metrics

Version 1.2
R ≥ 2.10
Published 2019-02-19 1896 days ago
Needs compilation? no
License GPL-3
CRAN checks KOGMWU results

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Maintainer

Maintainer

Mikhail V. Matz

matz@utexas.edu

Authors

Mikhail V. Matz

Material

Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

KOGMWU archive

Depends

R ≥ 2.10
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