CRAN/E | IFC

IFC

Tools for Imaging Flow Cytometry

Installation

About

Contains several tools to treat imaging flow cytometry data from 'ImageStream®' and 'FlowSight®' cytometers ('Amnis®' 'Cytek®'). Provides an easy and simple way to read and write .fcs, .rif, .cif and .daf files. Information such as masks, features, regions and populations set within these files can be retrieved for each single cell. In addition, raw data such as images stored can also be accessed. Users, may hopefully increase their productivity thanks to dedicated functions to extract, visualize, manipulate and export 'IFC' data. Toy data example can be installed through the 'IFCdata' package of approximately 32 MB, which is available in a 'drat' repository . See file 'COPYRIGHTS' and file 'AUTHORS' for a list of copyright holders and authors.

Citation IFC citation info
Copyright file inst/COPYRIGHTS IFC copyright details
Bug report File report

Key Metrics

Version 0.2.1
R ≥ 3.4.0
Published 2023-09-13 224 days ago
Needs compilation? yes
License GPL-3
CRAN checks IFC results

Downloads

Yesterday 13 +160%
Last 7 days 88 -9%
Last 30 days 316 -9%
Last 90 days 1.077 -11%
Last 365 days 4.185 +0%

Maintainer

Maintainer

Yohann Demont

git.demont@gmail.com

Authors

Yohann Demont

aut / cre

Gautier Stoll

ctb

Guido Kroemer

ldr

Jean-Pierre Marolleau

ldr

Loïc Garçon

ldr

Material

Reference manual
Package source

Additional repos

gitdemont.github.io/IFCdata/

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

IFC archive

Depends

R ≥ 3.4.0

Imports

Rcpp ≥ 0.10.0
xml2
utils
grid
gridExtra
gridGraphics
lattice
latticeExtra
KernSmooth
DT
visNetwork

Suggests

IFCdata
shiny
reticulate
png
tiff
jpeg

LinkingTo

Rcpp