CRAN/E | HaDeX

HaDeX

Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass Spectrometry Data

Installation

About

Functions for processing, analysis and visualization of Hydrogen Deuterium eXchange monitored by Mass Spectrometry experiments (HDX-MS) (10.1093/bioinformatics/btaa587). 'HaDeX' introduces a new standardized and reproducible workflow for the analysis of the HDX-MS data, including novel uncertainty intervals. Additionally, it covers data exploration, quality control and generation of publication-quality figures. All functionalities are also available in the in-built 'Shiny' app.

Key Metrics

Version 1.2.2
R ≥ 3.0
Published 2021-08-12 988 days ago
Needs compilation? no
License GPL-3
CRAN checks HaDeX results
Language en-US

Downloads

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Last 30 days 256 -9%
Last 90 days 774 -22%
Last 365 days 3.234 -14%

Maintainer

Maintainer

Weronika Puchala

puchala.weronika@gmail.com

Authors

Weronika Puchala

cre / aut

Michal Burdukiewicz

aut

Dominik Rafacz

ctb

Material

README
ChangeLog
Reference manual
Package source

Vignettes

HaDeX: Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass Spectrometry Data
Data processing
Mass calculation
Data aggregation

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

HaDeX archive

Depends

R ≥ 3.0

Imports

data.table
dplyr
DT
ggplot2
gsubfn
latex2exp
reshape2
readr
readxl
shiny
stringr
tidyr

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