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Detection of haplotype patterns that include single nucleotide polymorphisms (SNPs) and non-contiguous haplotypes that are associated with a phenotype. Methods for implementing HTRX are described in Yang Y, Lawson DJ (2023) doi:10.1093/bioadv/vbad038 and Barrie W, Yang Y, Irving-Pease E.K, et al (2024) doi:10.1038/s41586-023-06618-z.
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