CRAN/E | GenoTriplo

GenoTriplo

Genotyping Triploids (or Diploids) from Luminescence Data

Installation

About

Genotyping of triploid individuals from luminescence data (marker probeset A and B). Works also for diploids. Two main functions: Run_Clustering() that regroups individuals with a same genotype based on proximity and Run_Genotyping() that assigns a genotype to each cluster. For Shiny interface use: launch_GenoShiny().

Key Metrics

Version 1.0.4
R ≥ 3.5.0
Published 2024-02-28 61 days ago
Needs compilation? no
License GPL-2
License GPL-3
CRAN checks GenoTriplo results

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Maintainer

Maintainer

Julien Roche

jjm.roche@gmail.com

Authors

Julien Roche

aut / cre

Florence Phocas

aut

Mathieu Besson

aut

Pierre Patrice

aut

Marc Vandeputte

aut

François Allal

aut

Pierrick Haffray

aut

Material

Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

GenoTriplo archive

Depends

R ≥ 3.5.0
shinyBS

Imports

cowplot
doParallel
dplyr
DT
foreach
ggplot2
htmltools
parallel
processx
rlang
Rmixmod
shiny
shinythemes
tidyr