CRAN/E | GeneNMF

GeneNMF

Non-Negative Matrix Factorization for Single-Cell Omics

Installation

About

A collection of methods to extract gene programs from single-cell gene expression data using non-negative matrix factorization (NMF). 'GeneNMF' contains functions to directly interact with the 'Seurat' toolkit and derive interpretable gene program signatures.

github.com/carmonalab/GeneNMF
Bug report File report

Key Metrics

Version 0.4.0
R ≥ 4.3.0
Published 2024-02-29 64 days ago
Needs compilation? no
License GPL-3
CRAN checks GeneNMF results

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Maintainer

Maintainer

Massimo Andreatta

massimo.andreatta@unil.ch

Authors

Massimo Andreatta

aut / cre

Santiago Carmona

aut

Material

README
NEWS
Reference manual
Package source

Vignettes

Index of GeneNMF vignettes

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-develnot available

x86_64

r-releasenot available

x86_64

r-oldrelnot available

x86_64

Depends

R ≥ 4.3.0

Imports

RcppML
NMF
stats
Seurat ≥ 4.3.0
cluster
pheatmap
viridis

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