CRAN/E | GSSTDA

GSSTDA

Gene Structure Survival using Topological Data Analysis

Installation

About

Mapper-based survival analysis with transcriptomics data is designed to carry out. Mapper-based survival analysis is a modification of Progression Analysis of Disease (PAD) where survival data is taken into account in the filtering function. More details in: J. Fores-Martos, B. Suay-Garcia, R. Bosch-Romeu, M.C. Sanfeliu-Alonso, A. Falco, J. Climent, "Progression Analysis of Disease with Survival (PAD-S) by SurvMap identifies different prognostic subgroups of breast cancer in a large combined set of transcriptomics and methylation studies" doi:10.1101/2022.09.08.507080.

Key Metrics

Version 0.1.3
R ≥ 3.5.0
Published 2023-06-07 331 days ago
Needs compilation? no
License GPL-3
CRAN checks GSSTDA results

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Maintainer

Maintainer

Miriam Esteve

miriam.estevecampello@uchceu.es

Authors

Miriam Esteve

aut / cre

Raquel Bosch

aut

Jaume Forés

aut

Joan Climent

aut

Antonio Falco

aut

Material

README
Reference manual
Package source

Vignettes

GSSTDA-vignette

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-develnot available

x86_64

r-releasenot available

x86_64

r-oldrelnot available

x86_64

Depends

R ≥ 3.5.0

Imports

base
cluster
stats
survival
utils
visNetwork
ComplexHeatmap
circlize
devtools

Suggests

rmarkdown
knitr
testthat ≥ 3.0.0