CRAN/E | GOxploreR

GOxploreR

Structural Exploration of the Gene Ontology (GO) Knowledge Base

Installation

About

It provides an effective, efficient, and fast way to explore the Gene Ontology (GO). Given a set of genes, the package contains functions to assess the GO and obtain the terms associated with the genes and the levels of the GO terms. The package provides functions for the three different GO ontology. We discussed the methods explicitly in the following article doi:10.1038/s41598-020-73326-3.

Key Metrics

Version 1.2.6
R ≥ 2.10
Published 2022-04-19 732 days ago
Needs compilation? no
License GPL-2
CRAN checks GOxploreR results

Downloads

Yesterday 33
Last 7 days 59 0%
Last 30 days 304 -18%
Last 90 days 1.243 +11%
Last 365 days 4.216 +14%

Maintainer

Maintainer

Kalifa Manjang

kalifamanjang1@gmail.com

Authors

Kalifa Manjang
Frank Emmert-Streib
Shailesh Tripathi
Olli Yli-Harja
Matthias Dehmer

Material

Reference manual
Package source

Vignettes

GOxploreR

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

GOxploreR archive

Depends

R ≥ 2.10
GO.db
gontr
ggraph

Imports

igraph
network
dplyr
biomaRt
annotate
graphics
ggplot2

Suggests

knitr
rmarkdown