CRAN/E | GLMaSPU

GLMaSPU

An Adaptive Test on High Dimensional Parameters in Generalized Linear Models

Installation

About

Several tests for high dimensional generalized linear models have been proposed recently. In this package, we implemented a new test called adaptive sum of powered score (aSPU) for high dimensional generalized linear models, which is often more powerful than the existing methods in a wide scenarios. We also implemented permutation based version of several existing methods for research purpose. We recommend users use the aSPU test for their real testing problem. You can learn more about the tests implemented in the package via the following papers: 1. Pan, W., Kim, J., Zhang, Y., Shen, X. and Wei, P. (2014) doi:10.1534/genetics.114.165035 A powerful and adaptive association test for rare variants, Genetics, 197(4). 2. Guo, B., and Chen, S. X. (2016) doi:10.1111/rssb.12152. Tests for high dimensional generalized linear models. Journal of the Royal Statistical Society: Series B. 3. Goeman, J. J., Van Houwelingen, H. C., and Finos, L. (2011) doi:10.1093/biomet/asr016. Testing against a high-dimensional alternative in the generalized linear model: asymptotic type I error control. Biometrika, 98(2).

Key Metrics

Version 1.0
R ≥ 3.1.1
Published 2016-12-09 2704 days ago
Needs compilation? yes
License GPL-2
CRAN checks GLMaSPU results

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Maintainer

Maintainer

Chong Wu

wuxx0845@umn.edu

Authors

Chong Wu
Wei Pan

Material

Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Depends

R ≥ 3.1.1
mvtnorm ≥ 1.0-0

Imports

MASS
mnormt
Rcpp ≥ 0.12.6

LinkingTo

Rcpp
RcppArmadillo