CRAN/E | GGMncv

GGMncv

Gaussian Graphical Models with Nonconvex Regularization

Installation

About

Estimate Gaussian graphical models with nonconvex penalties doi:10.31234/osf.io/ad57p, including the atan Wang and Zhu (2016) doi:10.1155/2016/6495417, seamless L0 Dicker, Huang, and Lin (2013) doi:10.5705/ss.2011.074, exponential Wang, Fan, and Zhu doi:10.1007/s10463-016-0588-3, smooth integration of counting and absolute deviation Lv and Fan (2009) doi:10.1214/09-AOS683, logarithm Mazumder, Friedman, and Hastie (2011) doi:10.1198/jasa.2011.tm09738, Lq, smoothly clipped absolute deviation Fan and Li (2001) doi:10.1198/016214501753382273, and minimax concave penalty Zhang (2010) doi:10.1214/09-AOS729. There are also extensions for computing variable inclusion probabilities, multiple regression coefficients, and statistical inference doi:10.1214/15-EJS1031.

Bug report File report

Key Metrics

Version 2.1.1
R ≥ 4.0.0
Published 2021-12-15 855 days ago
Needs compilation? yes
License GPL-2
CRAN checks GGMncv results

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Maintainer

Maintainer

Donald Williams

drwwilliams@ucdavis.edu

Authors

Donald Williams

aut / cre

Material

README
Reference manual
Package source

Vignettes

NCT: CPU Time
High Dimensional Data: Must Read!!
Custom Network Comparison Tests
NCT: Null Distributions
Positive Manifold (Sign Restriction)

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

GGMncv archive

Depends

R ≥ 4.0.0

Imports

Rcpp ≥ 1.0.4.6
Rdpack ≥ 0.11-1
reshape
GGally ≥1.4.0
ggplot2 ≥ 3.3.0
glassoFast ≥ 1.0
network ≥1.15
numDeriv ≥ 2016.8-1.1
mathjaxr ≥ 1.0-1
MASS ≥7.3-51.5
methods
parallel
pbapply
sna ≥ 2.5
stats
utils

Suggests

car
corpcor
corrplot
dplyr
NetworkToolbox
NetworkComparisonTest
nlshrink
rmarkdown
knitr

LinkingTo

Rcpp
RcppArmadillo

Reverse Imports

GGMnonreg
IRCcheck
SEMgraph

Reverse Suggests

bootnet