CRAN/E | ExpGenetic

ExpGenetic

Non-Additive Expression Analysis of Hybrid Offspring

Installation

About

Three functional modules, including genetic features, differential expression analysis and non-additive expression analysis were integrated into the package. And the package is suitable for RNA-seq and small RNA sequencing data. Besides, two methods of non-additive expression analysis were provided. One is the calculation of the additive (a) and dominant (d), the other is the evaluation of expression level dominance by comparing the total expression of the gene in hybrid offspring with the expression level in parents. For non-additive expression analysis of RNA-seq data, it is only applicable to hybrid offspring (including two sub-genomes) species for the time being.

Key Metrics

Version 0.1.0
R ≥ 2.10
Published 2022-09-09 595 days ago
Needs compilation? no
License AGPL (≥ 3)
CRAN checks ExpGenetic results

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Maintainer

Maintainer

Yuqing Wu

wuyuqing0104@163.com

Authors

Yuqing Wu

aut / cre

Material

Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-develnot available

x86_64

r-releasenot available

x86_64

r-oldrelnot available

x86_64

Depends

R ≥ 2.10

Imports

DESeq2 ≥ 1.34.0
futile.logger ≥ 1.4.3
ggplot2 ≥3.3.6
ggsci ≥ 2.9
plyr ≥ 1.8.7
VennDiagram ≥ 1.7.3