CRAN/E | EvoPhylo

EvoPhylo

Pre- And Postprocessing of Morphological Data from Relaxed Clock Bayesian Phylogenetics

Installation

About

Performs automated morphological character partitioning for phylogenetic analyses and analyze macroevolutionary parameter outputs from clock (time-calibrated) Bayesian inference analyses, following concepts introduced by Simões and Pierce (2021) doi:10.1038/s41559-021-01532-x.

Citation EvoPhylo citation info
github.com/tiago-simoes/EvoPhylo
tiago-simoes.github.io/EvoPhylo/
Bug report File report

Key Metrics

Version 0.3.2
R ≥ 4.0.0
Published 2022-11-03 538 days ago
Needs compilation? no
License GPL-2
License GPL-3
CRAN checks EvoPhylo results

Downloads

Yesterday 5 0%
Last 7 days 45 -18%
Last 30 days 205 -16%
Last 90 days 724 -5%
Last 365 days 2.656 +6%

Maintainer

Maintainer

Tiago Simoes

trsimoes87@gmail.com

Authors

Tiago Simoes

cre / aut

Noah Greifer

aut

Joelle Barido-Sottani

aut

Stephanie Pierce

aut

Material

NEWS
Reference manual
Package source

In Views

Phylogenetics

Vignettes

Character Partitioning
Theoretical background
Analyzing FBD Parameters
Analyzing Trees With Offsets
Evolutionary Rates & Selection Mode (BEAST2)
Evolutionary Rates & Selection Mode (Mr.Bayes)

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

EvoPhylo archive

Depends

R ≥ 4.0.0

Imports

ape ≥ 1.16.2
dplyr ≥ 1.0.8
cluster ≥ 2.1.2
deeptime ≥ 0.2.0
ggplot2 ≥ 3.3.5
ggrepel ≥ 0.9.1
ggtree ≥ 3.1.5.902
patchwork
treeio ≥ 1.16.2
Rtsne ≥0.15
unglue ≥ 0.1.0
devtools ≥ 2.4.3

Suggests

kableExtra
knitr
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