CRAN/E | EpiSignalDetection

EpiSignalDetection

Signal Detection Analysis

Installation

About

Exploring time series for signal detection. It is specifically designed to detect possible outbreaks using infectious disease surveillance data at the European Union / European Economic Area or country level. Automatic detection tools used are presented in the paper "Monitoring count time series in R: aberration detection in public health surveillance", by Salmon (2016) doi:10.18637/jss.v070.i10. The package includes: - Signal Detection tool, an interactive 'shiny' application in which the user can import external data and perform basic signal detection analyses; - An automated report in HTML format, presenting the results of the time series analysis in tables and graphs. This report can also be stratified by population characteristics (see 'Population' variable). This project was funded by the European Centre for Disease Prevention and Control.

github.com/EU-ECDC/EpiSignalDetection
System requirements pandoc (>= 1.12.3)

Key Metrics

Version 0.1.2
R ≥ 3.4.0
Published 2021-11-30 849 days ago
Needs compilation? no
License EUPL
CRAN checks EpiSignalDetection results

Downloads

Yesterday 12 +20%
Last 7 days 67 +5%
Last 30 days 240 -6%
Last 90 days 893 +32%
Last 365 days 2.997 -4%

Maintainer

Maintainer

Lore Merdrignac

l.merdrignac@epiconcept.fr

Authors

Lore Merdrignac

aut

ctr

cre

(Author of the package and original code)

Joana Gomes Dias

aut / fnd

(Project manager)

Esther Kissling

aut

ctr
Tommi Karki

aut / fnd

Margot Einoder-Moreno

ctb / fnd

Material

README
NEWS
Reference manual
Package source

Vignettes

The 'Epidemiological Signal Detection' Package

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

EpiSignalDetection archive

Depends

R ≥ 3.4.0

Imports

dplyr
graphics
ISOweek
rmarkdown
shiny
surveillance
utils

Suggests

DT
ggplot2
knitr ≥ 1.20
pander