CRAN/E | EpiEstim

EpiEstim

Estimate Time Varying Reproduction Numbers from Epidemic Curves

Installation

About

Tools to quantify transmissibility throughout an epidemic from the analysis of time series of incidence as described in Cori et al. (2013) doi:10.1093/aje/kwt133 and Wallinga and Teunis (2004) doi:10.1093/aje/kwh255.

github.com/mrc-ide/EpiEstim
Bug report File report

Key Metrics

Version 2.2-4
R ≥ 2.10
Published 2021-01-07 1205 days ago
Needs compilation? no
License GPL-2
License GPL-3
CRAN checks EpiEstim results

Downloads

Yesterday 42 -9%
Last 7 days 267 -10%
Last 30 days 1.084 +1%
Last 90 days 3.108 -19%
Last 365 days 13.856 -41%

Maintainer

Maintainer

Anne Cori

a.cori@imperial.ac.uk

Authors

Anne Cori

aut / cre

Simon Cauchemez

ctb

Neil M. Ferguson

ctb

Christophe Fraser

ctb

Elisabeth Dahlqwist

ctb

P. Alex Demarsh

ctb

Thibaut Jombart

ctb

Zhian N. Kamvar

ctb

Justin Lessler

ctb

Shikun Li

ctb

Jonathan A. Polonsky

ctb

Jake Stockwin

ctb

Robin Thompson

ctb

Rolina van Gaalen

ctb

Material

README
NEWS
Reference manual
Package source

In Views

Epidemiology

Vignettes

EpiEstim demonstration

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

EpiEstim archive

Depends

R ≥ 2.10

Imports

coarseDataTools ≥ 0.6-4
stats
graphics
reshape2
ggplot2
gridExtra
fitdistrplus
coda
incidence ≥ 1.7.0
scales
grDevices

Suggests

testthat
utils
vdiffr
covr
knitr
rmarkdown

Reverse Imports

covid19india
earlyR
EpiLPS

Reverse Suggests

epidemia
projections