CRAN/E | EMMIXgene

EMMIXgene

A Mixture Model-Based Approach to the Clustering of Microarray Expression Data

Installation

About

Provides unsupervised selection and clustering of microarray data using mixture models. Following the methods described in McLachlan, Bean and Peel (2002) doi:10.1093/bioinformatics/18.3.413 a subset of genes are selected based one the likelihood ratio statistic for the test of one versus two components when fitting mixtures of t-distributions to the expression data for each gene. The dimensionality of this gene subset is further reduced through the use of mixtures of factor analyzers, allowing the tissue samples to be clustered by fitting mixtures of normal distributions.

Citation EMMIXgene citation info

Key Metrics

Version 0.1.4
R ≥ 3.3.0
Published 2024-01-21 96 days ago
Needs compilation? yes
License GPL (≥ 3)
CRAN checks EMMIXgene results

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Maintainer

Maintainer

Andrew Thomas Jones

andrewthomasjones@gmail.com

Authors

Andrew Thomas Jones

aut / cre

Material

README
NEWS
Reference manual
Package source

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macOS

r-release

arm64

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arm64

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x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

EMMIXgene archive

Depends

R ≥ 3.3.0

Imports

Rcpp
stats
mclust
reshape
ggplot2
scales
tools

LinkingTo

Rcpp
RcppArmadillo
BH