CRAN/E | EHR

EHR

Electronic Health Record (EHR) Data Processing and Analysis Tool

Installation

About

Process and analyze electronic health record (EHR) data. The 'EHR' package provides modules to perform diverse medication-related studies using data from EHR databases. Especially, the package includes modules to perform pharmacokinetic/pharmacodynamic (PK/PD) analyses using EHRs, as outlined in Choi, Beck, McNeer, Weeks, Williams, James, Niu, Abou-Khalil, Birdwell, Roden, Stein, Bejan, Denny, and Van Driest (2020) doi:10.1002/cpt.1787. Additional modules will be added in future. In addition, this package provides various functions useful to perform Phenome Wide Association Study (PheWAS) to explore associations between drug exposure and phenotypes obtained from EHR data, as outlined in Choi, Carroll, Beck, Mosley, Roden, Denny, and Van Driest (2018) doi:10.1093/bioinformatics/bty306.

choileena.github.io/

Key Metrics

Version 0.4-11
R ≥ 2.10
Published 2022-12-19 485 days ago
Needs compilation? no
License GPL (≥ 3)
CRAN checks EHR results

Downloads

Yesterday 5
Last 7 days 49 -49%
Last 30 days 298 -16%
Last 90 days 1.200 +23%
Last 365 days 4.394 -8%

Maintainer

Maintainer

Leena Choi

leena.choi@vanderbilt.edu

Authors

Leena Choi

aut / cre

Cole Beck

aut

Hannah Weeks

aut

Elizabeth McNeer

aut

Nathan James

aut

Michael Williams

aut

Material

Reference manual
Package source

Vignettes

1. EHR Vignette for Extract-Med and Pro-Med-NLP
2. EHR Vignette for Structured Data
3. Dose Building Using Example Vanderbilt EHR Data
4. EHR Vignette for Build-PK-Oral

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

EHR archive

Depends

R ≥ 2.10

Imports

stats
utils
data.table
methods
lubridate
pkdata

Suggests

glmnet
logistf
medExtractR ≥ 0.4.1
knitr
rmarkdown
ggplot2
markdown