CRAN/E | DarkDiv

DarkDiv

Estimating Dark Diversity and Site-Specific Species Pools

Installation

About

Estimation of dark diversity and site-specific species pools using species co-occurrences. It includes implementations of probabilistic dark diversity based on the Hypergeometric distribution, as well as estimations based on the Beals index, which can be transformed to binary predictions using different thresholds, or transformed into a favorability index. All methods include the possibility of using a calibration dataset that is used to estimate the indication matrix between pairs of species, or to estimate dark diversity directly on a single dataset. See De Caceres and Legendre (2008) doi:10.1007/s00442-008-1017-y, Lewis et al. (2016) doi:10.1111/2041-210X.12443, Partel et al. (2011) doi:10.1016/j.tree.2010.12.004, Real et al. (2017) doi:10.1093/sysbio/syw072 for further information.

Key Metrics

Version 0.3.0
Published 2020-07-15 1374 days ago
Needs compilation? no
License GPL-3
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Maintainer

Maintainer

Carlos P. Carmona

perezcarmonacarlos@gmail.com

Authors

Carlos P. Carmona
Meelis Partel

Material

Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

DarkDiv archive

Imports

vegan
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