CRAN/E | DCLEAR

DCLEAR

Distance Based Cell Lineage Reconstruction

Installation

About

R codes for distance based cell lineage reconstruction. Our methods won both sub-challenges 2 and 3 of the Allen Institute Cell Lineage Reconstruction DREAM Challenge in 2020. References: Gong et al. (2021) doi:10.1016/j.cels.2021.05.008, Gong et al. (2022) doi:10.1186/s12859-022-04633-x.

github.com/ikwak2/DCLEAR

Key Metrics

Version 1.0.13
R ≥ 4.1.0
Published 2023-09-14 214 days ago
Needs compilation? yes
License GPL-3
CRAN checks DCLEAR results

Downloads

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Maintainer

Maintainer

Il-Youp Kwak

ikwak2@cau.ac.kr

Authors

Il-Youp Kwak

aut / cre

Wuming Gong

aut

Material

README
Reference manual
Package source

Vignettes

prediction for subchallenge 3
DCLEAR : Distance based Cell LinEAge Reconstruction-weighted hamming

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

DCLEAR archive

Depends

R ≥ 4.1.0
tensorflow ≥ 2.2.0

Imports

BiocParallel
dplyr
Matrix
matrixStats
ape
phangorn
Rcpp
igraph
methods
purrr
stringr
tidyr
rBayesianOptimization
rlang
BiocGenerics

Suggests

knitr
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markdown

LinkingTo

Rcpp
RcppArmadillo