CRAN/E | DAISIE

DAISIE

Dynamical Assembly of Islands by Speciation, Immigration and Extinction

Installation

About

Simulates and computes the (maximum) likelihood of a dynamical model of island biota assembly through speciation, immigration and extinction. See Valente et al. (2015) doi:10.1111/ele.12461.

github.com/rsetienne/DAISIE
rsetienne.github.io/DAISIE/
Copyright See the file COPYRIGHTS for various DAISIE copyright details DAISIE copyright details
System requirements C++17
Bug report File report

Key Metrics

Version 4.4.1
R ≥ 4.2.0
Published 2023-10-21 182 days ago
Needs compilation? yes
License GPL (≥ 3)
License File
CRAN checks DAISIE results

Downloads

Yesterday 31
Last 7 days 50 -9%
Last 30 days 287 -14%
Last 90 days 1.152 +14%
Last 365 days 3.809 -32%

Maintainer

Maintainer

Rampal S. Etienne

r.s.etienne@rug.nl

Authors

Rampal S. Etienne

aut / cre

Luis Valente

aut

Albert B. Phillimore

aut

Bart Haegeman

aut

Joshua W. Lambert

aut

Pedro Santos Neves

aut

Shu Xie

aut

Richèl J.C. Bilderbeek

aut

Hanno Hildenbrandt

aut

Torsten Hauffe

ctb

Giovanni Laudanno

ctb

Nadiah Kristensen

ctb

Raphael Scherrer

ctb

Material

NEWS
Reference manual
Package source

Vignettes

Demo: Fitting clade-specific and island-wide diversity-dependence models in DAISIE
Demo optimizing parameters
Demo simulating islands
DAISIE 'stac' values

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

DAISIE archive

Depends

R ≥ 4.2.0

Imports

deSolve
graphics
stats
utils
DDD ≥ 5.0
subplex
Matrix
tensor
pracma
testit
foreach
doParallel
magrittr
parallel
Rcpp ≥ 1.0.10

Suggests

covr
testthat ≥ 2.1.0
knitr
rmarkdown
gridExtra
dplyr
ggplot2
ggtree ≥ 3.0.0
tidytree
tidyr
purrr
ape
phytools
tibble

Enhances

doMC

LinkingTo

Rcpp
RcppEigen
BH ≥ 1.81.0-1

Reverse Imports

DAISIEprep

Reverse Suggests

nLTT