CRAN/E | CytoSimplex

CytoSimplex

Simplex Visualization of Cell Fate Similarity in Single-Cell Data

Installation

About

Create simplex plots to visualize the similarity between single-cells and selected clusters in a 1-/2-/3-simplex space. Velocity information can be added as an additional layer. See Liu J, Wang Y et al (2023) doi:10.1101/2023.12.07.570655 for more details.

welch-lab.github.io/CytoSimplex/
github.com/welch-lab/CytoSimplex

Key Metrics

Version 0.1.1
R ≥ 3.6
Published 2023-12-15 126 days ago
Needs compilation? yes
License GPL-3
CRAN checks CytoSimplex results

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Maintainer

Maintainer

Yichen Wang

wayichen@umich.edu

Authors

Yichen Wang

aut / cre

Jialin Liu

aut

Joshua Welch

cph

Material

README
NEWS
Reference manual
Package source

Vignettes

Simplex Visualization of Cell Fate Similarity in Single-Cell Data

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-releasenot available

x86_64

r-oldrelnot available

x86_64

Old Sources

CytoSimplex archive

Depends

stats
methods
R ≥ 3.6

Imports

ggplot2
Matrix
plot3D
Rcpp
rlang

Suggests

knitr
magick
patchwork
rgl
rmarkdown
Seurat
SeuratObject
SingleCellExperiment
SummarizedExperiment
testthat ≥ 3.0.0

LinkingTo

Rcpp
RcppArmadillo